boundary_interpolate

calculate boundaries of brain area on interpolated slices

usage: boundary_interpolate [-n number_of_slices] [-i interpolation_factor] image_directory head_directory

head_directory contains the original images of the whole head, and image_directory contains the result of running brnrmvl on head_directory. If parameters for number of slices and interpolation factor are specified on the command line, they override the values in a VoxelView _dimensions file. If these parameters are not specified on the command line and no _dimensions file exists, they default to 56 and 4, respectively. Note that the interpolation factor is a factor, i.e., an interpolation factor of 1 will produce zero interpolated slices, and in general an interpolation factor of N will produce N-1 interpolated slices.

If a large interpolation factor causes you to receive an error message, you will need to recompile this program with a larger value of MAX_INT_FACTOR.

In order for boundary_interpolate to work, boundary_blend must also be installed. boundary_interpolate looks for this program in /usr/local/bin.

Author: Matthew Belmonte